Tree of life for the genera of Chinese vascular plants

doi:10.1111/jse.12219

CORC > 植物研究所 > 中国科学院植物研究所 > 系统与进化植物学国家重点实验室

	Tree of life for the genera of Chinese vascular plants
	Chen, Zhi-Duan ; Yang, Tuo ; Lin, Li ; Lu, Li-Min ; Li, Hong-Lei ; Sun, Miao ; Liu, Bing ; Chen, Min ; Niu, Yan-Ting ; Ye, Jian-Fei
刊名	JOURNAL OF SYSTEMATICS AND EVOLUTION
	2016
卷号	54 期号:4
关键词	China DarwinTree megaphylogeny regional tree of life SoTree vascular plants
ISSN号	1674-4918
DOI	10.1111/jse.12219
文献子类	Article
英文摘要	We reconstructed a phylogenetic tree of Chinese vascular plants (Tracheophyta) using sequences of the chloroplast genes atpB, matK, ndhF, and rbcL and mitochondrial matR. We produced a matrix comprising 6098 species and including 13 695 DNA sequences, of which 1803 were newly generated. Our taxonomic sampling spanned 3114 genera representing 323 families of Chinese vascular plants, covering more than 93% of all genera known from China. The comprehensive large phylogeny supports most relationships among and within families recognized by recent molecular phylogenetic studies for lycophytes, ferns (monilophytes), gymnosperms, and angiosperms. For angiosperms, most families in Angiosperm Phylogeny Group IV are supported as monophyletic, except for a paraphyletic Dipterocarpaceae and Santalaceae. The infrafamilial relationships of several large families and monophyly of some large genera are well supported by our dense taxonomic sampling. Our results showed that two species of Eberhardtia are sister to a clade formed by all other taxa of Sapotaceae, except Sarcosperma. We have made our phylogeny of Chinese vascular plants publically available for the creation of subtrees via SoTree (http://www.darwintree.cn/flora/index.shtml), an automated phylogeny assembly tool for ecologists.
学科主题	Plant Sciences
电子版国际标准刊号	1759-6831
出版地	HOBOKEN
WOS关键词	SEED PLANTS ; EXTANT GYMNOSPERMS ; NUCLEOTIDE-SEQUENCES ; MOLECULAR PHYLOGENY ; DNA-SEQUENCES ; NUCLEAR GENES ; DATA SETS ; CHLOROPLAST ; EVOLUTION ; MITOCHONDRIAL
WOS研究方向	Science Citation Index Expanded (SCI-EXPANDED)
语种	英语
出版者	WILEY
WOS记录号	WOS:000383771900002
资助机构	National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31590822] ; National Key Basic Research Program of ChinaNational Basic Research Program of China [2014CB954100, 31270268, 31270269] ; Chinese Academy of Sciences International Institution Development Program [SAJC201315] ; Shenzhen Science and Technology Innovation Council Funding [KQC 201105310009A] ; Science and Technology Basic Work [2013FY112100] ; Chinese Academy of Sciences External Cooperation Program of BIC [GJHZ201321] ; Chinese Academy of Sciences Visiting Professorship for Senior International Scientists [2011T1S24] ; US National Science Foundation for Open tree [DEB-1208428] ; iDigBio [EF-1115210] ; Direct For Biological SciencesNational Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO) [1115210, 1208428] Funding Source: National Science Foundation ; Div Of Biological InfrastructureNational Science Foundation (NSF)NSF - Directorate for Biological Sciences (BIO) [1547229] Funding Source: National Science Foundation
内容类型	期刊论文
源URL	[http://ir.ibcas.ac.cn/handle/2S10CLM1/24359]
专题	系统与进化植物学国家重点实验室
作者单位	1.Zhao, Hui-Ling 2.Guo, Jing 3.Tan, Xin-Xin 4.Chinese Acad Sci, Comp Network Informat Ctr, Beijing 100190, Peoples R China 5.[Wu, Sheng-Dan 6.Su, Jun-Xia 7.[Soltis, Douglas E. 8.[Soltis, Douglas E.] Univ Florida, Dept Biol, Gainesville, FL 32611 USA 9.Taiwan Forestry Res Inst, Dept Bot, 20 Nan Hai Rd, Taipei 100, Peoples R China 10.Chinese Acad Sci, Wuhan Bot Garden, Wuhan 430074, Peoples R China
推荐引用方式 GB/T 7714	Chen, Zhi-Duan,Yang, Tuo,Lin, Li,et al. Tree of life for the genera of Chinese vascular plants[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2016,54(4).
APA	Chen, Zhi-Duan.,Yang, Tuo.,Lin, Li.,Lu, Li-Min.,Li, Hong-Lei.,...&Lu, An-Ming.(2016).Tree of life for the genera of Chinese vascular plants.JOURNAL OF SYSTEMATICS AND EVOLUTION,54(4).
MLA	Chen, Zhi-Duan,et al."Tree of life for the genera of Chinese vascular plants".JOURNAL OF SYSTEMATICS AND EVOLUTION 54.4(2016).