Phylogenomics of Elongate-Bodied Springtails Reveals Independent Transitions from Aboveground to Belowground Habitats in Deep Time

doi:10.1093/sysbio/syac024

	Phylogenomics of Elongate-Bodied Springtails Reveals Independent Transitions from Aboveground to Belowground Habitats in Deep Time
	Yu, Daoyuan 5,6,7; Ding, Yinhuan 4; Tihelka, Erik 3; Cai, Chenyang 1,2,3; Hu, Feng 5,6,7; Liu, Manqiang 5,6,7; Zhang, Feng 4
刊名	SYSTEMIC BIOLOGY
	2022-03-15
页码	9
关键词	Collembola phylogenomics soil-living adaptation whole-genome sequencing
ISSN号	1063-5157
DOI	10.1093/sysbio/syac024
通讯作者	Zhang, Feng(fzhang@njau.edu.cn)
英文摘要	Soil has become a major hotspot of biodiversity studies, yet the pattern and timing of the evolution of soil organisms are poorly known because of the scarcity of paleontological data. To overcome this limitation, we conducted a genome-based macroevolutionary study of an ancient, diversified, and widespread lineage of soil fauna, the elongate-bodied springtails (class Collembola, order Entomobryomorpha). To build the first robust backbone phylogeny of this previously refractory group, we sampled representatives of major higher taxa (6 out of 8 families, 11 out of 16 subfamilies) of the order with an emphasis on the most problematic superfamily Tomoceroidea, applied whole-genome sequencing methods, and compared the performance of different combinations of data sets (universal single-copy orthologs [USCO] vs. ultraconserved elements]) and modeling schemes. The fossil-calibrated timetree was used to reconstruct the evolution of body size, sensory organs, and pigmentation to establish a time frame of the ecomorphological divergences. The resultant trees based on different analyses were congruent in most nodes. Several discordant nodes were carefully evaluated by considering method fitness, morphological information, and topology test. The evaluation favored the well-resolved topology from analyses using USCO amino acid matrices and complex site-heterogeneous models (CAT+GTR and LG-PPMSF (C60)). The preferred topology supports the monophyletic superfamily Tomoceroidea as an early-diverging lineage and a sister relationship between Entomobryoidea and Isotomoidea. The family Tomoceridae was recovered as monophyletic, whereas Oncopoduridae was recovered as paraphyletic, with Harlomillsia as a sister to Tomoceridae and hence deserving a separate family status as Harlomillsiidae Yu and Zhang fam. n. Ancestral Entomobryomorpha were reconstructed as surface-living, supporting independent origins of soil-living groups across the Paleozoic-Mesozoic, and highlighting the ancient evolutionary interaction between aboveground and belowground fauna.
资助项目	National Natural Science Foundation of China[41971063] ; National Natural Science Foundation of China[31970434] ; National Natural Science Foundation of China[31772491] ; National Science and Technology Fundamental Resources Investigation Program of China[2018FY100300]
WOS关键词	ARBOREAL LIFE ; COLLEMBOLA ; EVOLUTION ; MODEL ; CHAETOTAXY ; INSIGHTS
WOS研究方向	Evolutionary Biology
语种	英语
出版者	OXFORD UNIV PRESS
WOS记录号	WOS:000786068100001
资助机构	National Natural Science Foundation of China ; National Science and Technology Fundamental Resources Investigation Program of China
内容类型	期刊论文
源URL	[http://ir.nigpas.ac.cn/handle/332004/40668]
专题	中国科学院南京地质古生物研究所
通讯作者	Zhang, Feng
作者单位	1.Chinese Acad Sci, Ctr Excellence Life & Paleoenvironm, Nanjing 210008, Peoples R China 2.Nanjing Inst Geol & Palaeontol, State Key Lab Palaeobiol & Stratig, Nanjing 210008, Peoples R China 3.Univ Bristol, Sch Earth Sci, Life Sci Bldg,Tyndall Ave, Bristol BS8 1TQ, Avon, England 4.Nanjing Agr Univ, Coll Plant Protect, Dept Entomol, Nanjing 210095, Peoples R China 5.Jiangsu Key Lab Solid Organ Waste Utilizat, Nanjing 210095, Peoples R China 6.Jiangsu Collaborat Innovat Ctr Solid Organ Waste, Nanjing 210095, Peoples R China 7.Nanjing Agr Univ, Coll Resources & Environm Sci, Soil Ecol Lab, Nanjing 210095, Peoples R China
推荐引用方式 GB/T 7714	Yu, Daoyuan,Ding, Yinhuan,Tihelka, Erik,et al. Phylogenomics of Elongate-Bodied Springtails Reveals Independent Transitions from Aboveground to Belowground Habitats in Deep Time[J]. SYSTEMIC BIOLOGY,2022:9.
APA	Yu, Daoyuan.,Ding, Yinhuan.,Tihelka, Erik.,Cai, Chenyang.,Hu, Feng.,...&Zhang, Feng.(2022).Phylogenomics of Elongate-Bodied Springtails Reveals Independent Transitions from Aboveground to Belowground Habitats in Deep Time.SYSTEMIC BIOLOGY,9.
MLA	Yu, Daoyuan,et al."Phylogenomics of Elongate-Bodied Springtails Reveals Independent Transitions from Aboveground to Belowground Habitats in Deep Time".SYSTEMIC BIOLOGY (2022):9.