Comparative genomic analysis of obligately piezophilic Moritella yayanosii DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench

doi:10.1099/mgen.0.000591

CORC > 深海科学与工程研究所 > 中国科学院深海科学与工程研究所 > 深海科学研究部 > 深海生物学研究室 > 深海微生物细胞生物学研究组

	Comparative genomic analysis of obligately piezophilic Moritella yayanosii DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench
	Zhang, Wei-Jia 2,3,4,5; Zhang, Chan 3; Zhou, Siyu 6; Li, Xue-Gong 2,3,4,5; Mangenot, Sophie 1; Fouteau, Stephanie 1; Guerin, Thomas 1; Qi, Xiao-Qing 2,3,4,5; Yang, Jian 6; Bartlett, Douglas H.7
刊名	MICROBIAL GENOMICS
	2021-07-01
卷号	7 期号:7 页码:15
关键词	obligate piezophile hadal trench Moritella high hydrostatic pressure (HHP) bacterial microcompartment (BMC) defense system
ISSN号	2057-5858
DOI	10.1099/mgen.0.000591
英文摘要	Hadal trenches are the deepest but underexplored ecosystems on the Earth. Inhabiting the trench bottom is a group of micro-organisms termed obligate piezophiles that grow exclusively under high hydrostatic pressures (HHP). To reveal the genetic and physiological characteristics of their peculiar lifestyles and microbial adaptation to extreme high pressures, we sequenced the complete genome of the obligately piezophilic bacterium Moritella yayanosii DB21MT-5 isolated from the deepest oceanic sedi-ment at the Challenger Deep, Mariana Trench. Through comparative analysis against pressure sensitive and deep- sea piezo-philic Moritella strains, we identified over a hundred genes that present exclusively in hadal strain DB21MT-5. The hadal strain encodes fewer signal transduction proteins and secreted polysaccharases, but has more abundant metal ion transporters and the potential to utilize plant-derived saccharides. Instead of producing osmolyte betaine from choline as other Moritella strains, strain DB21MT-5 ferments on choline within a dedicated bacterial microcompartment organelle. Furthermore, the defence systems possessed by DB21MT-5 are distinct from other Moritella strains but resemble those in obligate piezophiles obtained from the same geographical setting. Collectively, the intensive comparative genomic analysis of an obligately piezophilic strain Moritella yayanosii DB21MT-5 demonstrates a depth-dependent distribution of energy metabolic pathways, compartmentaliza-tion of important metabolism and use of distinct defence systems, which likely contribute to microbial adaptation to the bottom of hadal trench.
资助项目	Strategic Priority Research Programme of the Chinese Academy of Sciences[XDA19060403] ; National Natural Science Foundation of China[NSFC42076127] ; National Natural Science Foundation of China[91751108] ; National Natural Science Foundation of China[91751202] ; National Natural Science Foundation of China[41506147] ; National Key R and D Programme of China[2016YFC0304905-08] ; Key Research and Development Program of Hainan Province[ZDKJ2019011] ; Centre National de la Recherche Scientifique ; Agence Nationale pour la Recherche[ANR-10-INBS-09] ; Chinese Academy of Sciences ; [2018YD01]
WOS关键词	SP-NOV. ; BAROPHILIC BACTERIUM ; EXPANDED PREDICTION ; MICROBIAL COMMUNITY ; HIGH-PRESSURE ; SEA ; SEDIMENTS ; GENES ; SYSTEMS ; GROWTH
WOS研究方向	Genetics & Heredity ; Microbiology
语种	英语
出版者	MICROBIOLOGY SOC
WOS记录号	WOS:000681473100002
资助机构	Strategic Priority Research Programme of the Chinese Academy of Sciences ; National Natural Science Foundation of China ; National Key R and D Programme of China ; Key Research and Development Program of Hainan Province ; Centre National de la Recherche Scientifique ; Agence Nationale pour la Recherche ; Chinese Academy of Sciences
内容类型	期刊论文
源URL	[http://ir.idsse.ac.cn/handle/183446/8798]
专题	深海科学研究部_深海生物学研究室_深海微生物细胞生物学研究组
通讯作者	Zhang, Wei-Jia; Wu, Long-Fei
作者单位	1.Univ Paris Saclay, Univ Evry, CNRS, Genom Metab,CEA,Genoscope,Inst Francois Jacob, Evry, France 2.France China Joint Lab Evolut & Dev Magnetotact M, Marseille, France 3.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Lab Deep Sea Microbial Cell Biol, Beijing, Peoples R China 4.IDSSE CAS, Sanya, Peoples R China 5.Inst Deep Sea Life Sci, Hainan Deep Sea Technol Lab, Sanya, Peoples R China 6.Chinese Acad Med Sci & Peking Union Med Coll, Inst Pathogen Biol, NHC Key Lab Syst Biol Pathogens, Beijing, Peoples R China 7.Univ Calif San Diego, Scripps Inst Oceanog, Marine Biol Res Div, La Jolla, CA 92093 USA 8.Aix Marseille Univ, IM2B, CNRS, LCB UMR 7257,IMM, Marseille, France
推荐引用方式 GB/T 7714	Zhang, Wei-Jia,Zhang, Chan,Zhou, Siyu,et al. Comparative genomic analysis of obligately piezophilic Moritella yayanosii DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench[J]. MICROBIAL GENOMICS,2021,7(7):15.
APA	Zhang, Wei-Jia.,Zhang, Chan.,Zhou, Siyu.,Li, Xue-Gong.,Mangenot, Sophie.,...&Wu, Long-Fei.(2021).Comparative genomic analysis of obligately piezophilic Moritella yayanosii DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench.MICROBIAL GENOMICS,7(7),15.
MLA	Zhang, Wei-Jia,et al."Comparative genomic analysis of obligately piezophilic Moritella yayanosii DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench".MICROBIAL GENOMICS 7.7(2021):15.